High-performance gene name normalization with GENO

نویسندگان
چکیده

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

High-performance gene name normalization with GENO

MOTIVATION The recognition and normalization of textual mentions of gene and protein names is both particularly important and challenging. Its importance lies in the fact that they constitute the crucial conceptual entities in biomedicine. Their recognition and normalization remains a challenging task because of widespread gene name ambiguities within species, across species, with common Englis...

متن کامل

Integrating Various Resources for Gene Name Normalization

The recognition and normalization of gene mentions in biomedical literature are crucial steps in biomedical text mining. We present a system for extracting gene names from biomedical literature and normalizing them to gene identifiers in databases. The system consists of four major components: gene name recognition, entity mapping, disambiguation and filtering. The first component is a gene nam...

متن کامل

Species taxonomy for gene name normalization

Background: The task of gene normalization is to assign a unique identifier from a database to the gene mentions. Using these identifiers a great deal of information can be gathered from external databases such as interactions, pathways, sequences and protein structures. Normalizing gene mentions in articles is a difficult task as the inter-species ambiguity of the gene mentions in biomedical p...

متن کامل

Nymble: a High-Performance Learning Name-finder

This paper presents a statistical, learned approach to finding names and other nonrecursive entities in text (as per the MUC-6 definition of the NE task), using a variant of the standard hidden Markov model. We present our justification for the problem and our approach, a detailed discussion of the model itself and finally the successful results of this new approach.

متن کامل

Human Gene Name Normalization using Text Matching with Automatically Extracted Synonym Dictionaries

The identification of genes in biomedical text typically consists of two stages: identifying gene mentions and normalization of gene names. We have created an automated process that takes the output of named entity recognition (NER) systems designed to identify genes and normalizes them to standard referents. The system identifies human gene synonyms from online databases to generate an extensi...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: Bioinformatics

سال: 2009

ISSN: 1367-4803,1460-2059

DOI: 10.1093/bioinformatics/btp071